Parsimony, Phylogeny, and Genomics
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Product details:
- Edition number New ed
- Publisher OUP Oxford
- Date of Publication 16 March 2006
- ISBN 9780199297306
- Binding Paperback
- No. of pages240 pages
- Size 246x190x14 mm
- Weight 450 g
- Language English
- Illustrations Numerous line drawings and tables 0
Categories
Short description:
Parsimony analysis (cladistics) has long been one of the most widely used methods of phylogenetic inference in the fields of systematic and evolutionary biology. Moreover it has mathematical attributes that lend themselves for use with complex, genomic-scale data sets. This book demonstrates the potential that this powerful hierarchical data summarization method also has for both structural and functional comparative genomic research.
MoreLong description:
Parsimony analysis (cladistics) has long been one of the most widely used methods of phylogenetic inference in the fields of systematic and evolutionary biology. Moreover it has mathematical attributes that lend itself for use with complex, genomic-scale data sets. This book demonstrates the potential that this powerful hierarchical data summarization method also has for both structural and functional comparative genomic research.
"Many readers might be wondering why a simple principle such as parsimony would be so useful in a technologically advanced area of study like genomics. The answer is found within the pages of this volume." The Quarterly Review of Biology, Volume 82, Rob DeSalle, American Museum of Natural History
Table of Contents:
Preface
Parsimony and phylogenetics in the genomic age
The philosophy of parsimony analysis, including comparison with model-based approaches
What is the rationale for 'Ockham's Razor' (a.k.a. parsimony) in phylogenetic inference?
Parsimony and its presuppositions
Parsimony, character analysis, and optimization of sequence characters
The logic of the data matrix in phylogenetic analysis
Alignment, dynamic homology, and optimization
Parsimony and the problem of inapplicables in sequence data
Computational limits of parsimony analysis: from historical aspects to competition with fast model-based approaches
The limits of conventional cladistic analysis
Parsimony and Bayesian phylogenetics
Mathematical attributes of parsimony
Maximum parsimony and the phylogenetic information in multi-state characters
Parsimony and genomics
Using phylogeny to understand genomic evolution
Dollo parsimony and reconstruction of genome evolution
References
Index
